K&T Keynotes
Monday, August 3, 2:00 – 4:00 pm, Skirball Theater
In this two-hour session, each of the K&Ts are introduced. Attendees then can attend the K&T Tutorial of their choice.
Monday, August 3, 2:00 – 4:00 pm, Skirball Theater
In this two-hour session, each of the K&Ts are introduced. Attendees then can attend the K&T Tutorial of their choice.
Keynotes | K&Ts | GACs | Talks | Posters | Search
Monday, August 3, 11:45 am – 12:45 pm, Skirball Theater
Tuesday, August 4, 8:30 – 9:30 am, Skirball Theater
Wednesday, August 5, 8:30 – 9:30 am, Skirball Theater
Wednesday, August 5, 11:30 am – 12:30 pm, Skirball Theater
Thursday, August 6, 9:30 – 10:30 am, Skirball Theater
Monday, August 3, 4:30 – 6:15 pm, Kimmel Center, Eisner & Lubin Auditorium

Alessandro Gifford1, Domenic Bersch2, Gemma Roig2, Radoslaw Cichy1, 1 Freie Universität Berlin, 2 Goethe Universität Frankfurt
Abstract
The functioning of the brain largely remains unsolved, partly because collecting in vivo neural data is slow and expensive, creating a bottleneck for brain experimentation and discovery. The emerging paradigm of in silico neuroscience addresses this limitation by leveraging encoding models of the brain, algorithms that predict neural responses to massive amounts of sensory stimuli in a fast and economical fashion. The scalability of in silico neural responses – which are used as stand-ins for in vivo neural responses during experimentation and data analysis – allows researchers to test more scientific hypotheses and to upscale exploratory research compared to experimenting on in vivo data. Crucially, novel findings from large-scale in silico experimentation are eventually validated in vivo, but with targeted small-scale data collection, therefore optimizing research resources and allowing for faster neuroscientific discovery. This keynote and tutorial advocates for this emerging research paradigm on theoretical, empirical, and methodological grounds. Theoretically, we will cover its advantages and limitations. Empirically, we will present recent work from our and other groups, where large-scale in silico experiments enabled discoveries that were then validated with targeted in vivo experiments. Methodologically, we will introduce the Brain Encoding Response Generator (BERG), a resource that we created consisting of pretrained encoding models of the brain and a Python package to facilitate researchers in the generation of in silico neural responses for visual and linguistic stimuli. Together, our goal is to excite interest in, and facilitate adoption of, this novel paradigm for brain discovery.
Tutorial Outline
The goal of the tutorial is to give participants hands-on experience with the emerging paradigm of in silico neuroscience, through three stages that logically progress into each other. In the first stage (~30 minutes), participants will learn how to use the Brain Encoding Response Generator (https://gifale95.github.io/BERG/) to generate in silico neural responses to visual stimuli using pre-trained encoding models of the brain. To establish the reliability of these in silico responses, in the second stage (~30 minutes) participants will experimentally show that they capture fundamental organizing principles of visual cortex, such as retinotopy or category selectivity. This will suggest that in silico responses also allow for scientific discovery. Thus, in the third stage (~45 minutes) participants will run large-scale experiments on in silico fMRI responses to explore visual selectivity across visual cortex, but also across underexplored cortical regions in vision neuroscience such as frontal areas. Throughout the tutorial, participants will actively make decisions such as which brain areas to investigate or which stimulus set to use, making the session highly interactive and experimental.
The tutorial will be accessible to researchers at all career stages with basic Python programming experience and a foundational understanding of fMRI data and regression-based statistical methods. Participants will implement in silico experiments through Google Colab notebooks in Python that run on the cloud without any software installation or data download, or locally as Jupyter notebooks. Although the tutorial will primarily focus on vision, the acquired experience naturally extends to other research domains within the CCN community such as language, audition, or motor planning, making the tutorial valuable to a diverse range of researchers interested in the emerging research paradigm of in silico neuroscience.
Link to Colab tutorial: https://colab.research.google.com/drive/1kXOzb5ivPNIk5izlqkHyCLaMz-0FqfSH?usp=sharing
Monday, August 3, 4:30 – 6:15 pm, Skirball Theater

Erin Grant1, Lukas Braun2, Eleanor Holton3, Marvin Theiss4, 1 University of Alberta, 2 Allen Institute, 3 Princeton University, 4 University of Tübingen
Abstract
Comparing patterns of neural activity within and between biological and artificial systems has become a core methodology in neuroscience, psychology, and machine learning. Motivated by the goal of advancing our understanding of neural computation, representational comparisons are used to infer shared or divergent computations in minds and machines. However, neural network theory challenges the assumption that representational similarity generally provides a measure of computational similarity and vice versa. This tension arises from two defining features of biological and artificial neural networks: adaptivity and degeneracy. While internal representations are adapted to task demands and objectives, many distinct network configurations with distinct internal representations can implement the same behavior. Adaptivity therefore motivates the use of artificial neural networks as normative models of representation learning, whereas degeneracy challenges the assumption that comparing patterns of neural activity is, by itself, a well-posed basis for inferring and comparing computation. Starting from simple two-layer linear networks and extending to deep nonlinear networks, we show how function and neural representation are dissociable and reveal theoretically grounded conditions under which representational comparisons become scientifically meaningful. We argue that in light of degeneracy, a central object of study in cognitive computational neuroscience should be representational plurality: the existence of distinct neural geometries that support identical behavior but differ in their downstream computational affordances. We show how representational plurality can be identified and investigated through theoretically motivated task design and behavioral readouts. Overall, the keynote uses neural network theory to delineate when representational geometry can and cannot support inference about computation, and argues for going beyond naive representational comparisons towards the study of representational formation, differentiation, and adaptation.
Tutorial Outline
In the tutorial, participants will learn how neural network theory challenges three common assumptions underlying representational comparisons: (1) that functional equivalence implies representational alignment (Yamins et al., PNAS 2014), (2) that increasing task demands drive representational convergence (Poldrack, Synthese 2021; Cao & Yamins, Cognitive Systems Research 2024; Huh et al., ICML 2024), and (3) that each task has a privileged representation or representational geometry (Kriegeskorte et al., PNAS 2006; Kriegeskorte et al., Front Syst Neurosci 2008). The tutorial is designed for participants with basic familiarity with Python and NumPy; no knowledge of neural network training or specialized deep learning libraries is required.
In Part 1, we will use analytically tractable deep linear networks as a canonical model for mapping inputs to hidden activation patterns to outputs. Through small coding exercises and interactive visualizations, participants will develop intuition for how function and representation can be doubly dissociable: networks can implement identical or distinct functions while exhibiting identical or distinct representational geometries. This directly challenges the assumption that functional equivalence entails representational alignment.
In Part 2, we will extend the analysis to simple deep nonlinear networks. Using the XOR task, participants will learn to distinguish between degeneracies that can be uncovered using held-out data and degeneracies that preserve the input-output function for all possible inputs while changing internal representations. We will show how these degeneracies in detail depend on the nonlinear activation function and the level of overparameterization within the network. This shows that representational degeneracies in nonlinear networks are dissociable from task demands.
In Part 3, participants will perform a searchlight-like analysis of three networks that solve the same task using arbitrary task-agnostic, orthogonal, or task-specific representational geometries. They will learn how partially withheld training data and behavioral readouts can reveal otherwise hidden differences in representational geometry. This motivates representational plurality: the idea that multiple geometries can support the same task while differing in their downstream computational affordances, such as transfer or memorization.
Overall, the tutorial will give participants a theoretical and practical framework for dissociating function from representation, interpreting representational comparison methods more critically, and identifying experimental questions and testing hypotheses about the computational consequences of different representational geometries.
Monday, August 3, 4:30 – 6:15 pm, Kimmel Center, Grand Hall

Luiz Pessoa1, Harrison Ritz2, 1 University of Maryland, 2 Queen's University
Abstract
Understanding macro-scale brain activity requires characterizing how information is encoded within brain areas, how information is exchanged between brain areas, and how encoding and connectivity change across contexts. While these pillars have historically been studied in isolation, state-space models (SSMs) offer a powerful framework for their unification. Although SSMs have seen growing popularity in computational systems neuroscience as probabilistic models of latent neural dynamics, their application to cognitive neuroscience is still in its infancy. In this keynote, we will show how SSMs can provide generative models of neural dynamics across diverse experimental paradigms. First, we will show the effectiveness of high-dimensional SSMs for comparing latent dynamics in epoched EEG experiments and recurrent neural networks. Second, in quasi-naturalistic fMRI paradigms, SSMs reveal how brain states evolve during threat processing. Third, when applied to resting-state fMRI, SSMs reveal that brain states bear many-to-many rather than one-to-one relationships with canonical functional connectivity networks. Together, these applications demonstrate how SSMs can offer a dynamics-first language for cognitive computational neuroscience.
Tutorial Outline
By the end of this tutorial, we want attendees to (1) appreciate the benefits and costs of state space modelling, (2) understand the mechanics of linear and switching SSMs, and (3) feel confident using standard packages in their own research. To be accessible to a broad audience, we will teach this tutorial on Google Colab using the Python package dynamax, while providing complementary materials in Julia and R (i.e., the Jupyter trifecta).
The tutorial will have three sections. Section 1 will introduce core statistical concepts for fitting SSMs: expectation maximization and Kalman filtering. Section 2 will reinforce the generative process from Section 1 by simulating a synthetic dataset from an SSM, and then recovering the parameters and latent dynamics from this ground-truth model. Section 3 will demonstrate how an SSM fitting procedure can be applied to empirical data. We will introduce the ‘Switching SSM’, explaining its generative process and potential use cases. We will then use Switching SSMs to model an open-access fMRI dataset. We hope that attendees will come away from this tutorial excited for how SSMs can open up new avenues for their research programs.
https://docs.google.com/document/d/13OJmOHRsFY67oVbDiH2QNyZuHok252ItNeRJoXwkJ_M
